2000 Biotechnology & Applied Microbiology


	Trend Research Centre

10,000 CLUB OF THE BIOTECHNOLOGY AND APPLIED MICROBIOLOGY

Science Citation Index-Expanded (SCI-EXPANDED) --1900-present

There were 59,181,445 publications which included 41,138,879 articles in the SCI-EXPANDED from 1900

There were 853,835 publications including 643,378 articles in Web of Science category of the biotechnology and applied microbiology

25 articles have been cited at least 10,000 times from Web of Science Core Collection.

Data last updated 05 November 2021

Figure 1. 10,000 club of the biotechnology and applied microbiology by year

Figure 2. 10,000 club of the biotechnology and applied microbiology by total citations

Figure 3. 10,000 club of the biotechnology and applied microbiology by citations per year

Figure 4. 10,000 club of the biotechnology and applied microbiology by total citations in 2020

Record 1 of 25

Title: Fast and accurate short read alignment with Burrows-Wheeler transform

Author(s): Li, H (Li, Heng); Durbin, R (Durbin, Richard)

Source: BIOINFORMATICS Volume: 25 Issue: 14 Pages: 1754-1760 DOI: 10.1093/bioinformatics/btp324 Published: JUL 15 2009

Times Cited in Web of Science Core Collection: 28122

Total Times Cited: 28409

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 2 of 25

Title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Author(s): Love, MI (Love, Michael I.); Huber, W (Huber, Wolfgang); Anders, S (Anders, Simon)

Source: GENOME BIOLOGY Volume: 15 Issue: 12 Article Number: 550 DOI: 10.1186/s13059-014-0550-8 Published: 2014

Times Cited in Web of Science Core Collection: 20922

Total Times Cited: 21060

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 3 of 25

Title: MrBayes 3: Bayesian phylogenetic inference under mixed models

Author(s): Ronquist, F (Ronquist, F); Huelsenbeck, JP (Huelsenbeck, JP)

Source: BIOINFORMATICS Volume: 19 Issue: 12 Pages: 1572-1574 DOI: 10.1093/bioinformatics/btg180 Published: AUG 12 2003

Times Cited in Web of Science Core Collection: 20890

Total Times Cited: 21682

Record 4 of 25

Title: Clustal W and clustal X version 2.0

Author(s): Larkin, MA (Larkin, M. A.); Blackshields, G (Blackshields, G.); Brown, NP (Brown, N. P.); Chenna, R (Chenna, R.); McGettigan, PA (McGettigan, P. A.); McWilliam, H (McWilliam, H.); Valentin, F (Valentin, F.); Wallace, IM (Wallace, I. M.); Wilm, A (Wilm, A.); Lopez, R (Lopez, R.); Thompson, JD (Thompson, J. D.); Gibson, TJ (Gibson, T. J.); Higgins, DG (Higgins, D. G.)

Source: BIOINFORMATICS Volume: 23 Issue: 21 Pages: 2947-2948 DOI: 10.1093/bioinformatics/btm404 Published: NOV 1 2007

Times Cited in Web of Science Core Collection: 20437

Total Times Cited: 21216

Record 5 of 25

Title: MRBAYES: Bayesian inference of phylogenetic trees

Author(s): Huelsenbeck, JP (Huelsenbeck, JP); Ronquist, F (Ronquist, F)

Source: BIOINFORMATICS Volume: 17 Issue: 8 Pages: 754-755 DOI: 10.1093/bioinformatics/17.8.754 Published: AUG 2001

Times Cited in Web of Science Core Collection: 20231

Total Times Cited: 21042

Record 6 of 25

Title: Trimmomatic: a flexible trimmer for Illumina sequence data

Author(s): Bolger, AM (Bolger, Anthony M.); Lohse, M (Lohse, Marc); Usadel, B (Usadel, Bjoern)

Source: BIOINFORMATICS Volume: 30 Issue: 15 Pages: 2114-2120 DOI: 10.1093/bioinformatics/btu170 Published: AUG 1 2014

Times Cited in Web of Science Core Collection: 19588

Total Times Cited: 19902

Record 7 of 25

Title: Cytoscape: A software environment for integrated models of biomolecular interaction networks

Author(s): Shannon, P (Shannon, P); Markiel, A (Markiel, A); Ozier, O (Ozier, O); Baliga, NS (Baliga, NS); Wang, JT (Wang, JT); Ramage, D (Ramage, D); Amin, N (Amin, N); Schwikowski, B (Schwikowski, B); Ideker, T (Ideker, T)

Source: GENOME RESEARCH Volume: 13 Issue: 11 Pages: 2498-2504 DOI: 10.1101/gr.1239303 Published: NOV 2003

Times Cited in Web of Science Core Collection: 18587

Total Times Cited: 19019

Conference Title: 3rd International Conference on Systems Biology 2002

Conference Date: DEC 13-15, 2002

Conference Location: KAROLINSKA INST, STOCKHOLM, SWEDEN

Conference Host: KAROLINSKA INST

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Genetics & Heredity

Record 8 of 25

Title: MODELTEST: testing the model of DNA substitution

Author(s): Posada, D (Posada, D); Crandall, KA (Crandall, KA)

Source: BIOINFORMATICS Volume: 14 Issue: 9 Pages: 817-818 DOI: 10.1093/bioinformatics/14.9.817 Published: 1998

Times Cited in Web of Science Core Collection: 17620

Total Times Cited: 18410

Record 9 of 25

Title: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Author(s): Robinson, MD (Robinson, Mark D.); McCarthy, DJ (McCarthy, Davis J.); Smyth, GK (Smyth, Gordon K.)

Source: BIOINFORMATICS Volume: 26 Issue: 1 Pages: 139-140 DOI: 10.1093/bioinformatics/btp616 Published: JAN 1 2010

Times Cited in Web of Science Core Collection: 15745

Total Times Cited: 15921

Record 10 of 25

Title: RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Author(s): Stamatakis, A (Stamatakis, Alexandros)

Source: BIOINFORMATICS Volume: 30 Issue: 9 Pages: 1312-1313 DOI: 10.1093/bioinformatics/btu033 Published: MAY 1 2014

Times Cited in Web of Science Core Collection: 15346

Total Times Cited: 15649

Record 11 of 25

Title: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Author(s): Vandesompele, J (Vandesompele, Jo); De Preter, K (De Preter, Katleen); Pattyn, F (Pattyn, Filip); Poppe, B (Poppe, Bruce); Van Roy, N (Van Roy, Nadine); De Paepe, A (De Paepe, Anne); Speleman, F (Speleman, Frank)

Source: GENOME BIOLOGY Volume: 3 Issue: 7 Article Number: 0034.1 DOI: 10.1186/gb-2002-3-7-research0034 Published: 2002

Times Cited in Web of Science Core Collection: 13658

Total Times Cited: 13989

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 12 of 25

Title: STAR: ultrafast universal RNA-seq aligner

Author(s): Dobin, A (Dobin, Alexander); Davis, CA (Davis, Carrie A.); Schlesinger, F (Schlesinger, Felix); Drenkow, J (Drenkow, Jorg); Zaleski, C (Zaleski, Chris); Jha, S (Jha, Sonali); Batut, P (Batut, Philippe); Chaisson, M (Chaisson, Mark); Gingeras, TR (Gingeras, Thomas R.)

Source: BIOINFORMATICS Volume: 29 Issue: 1 Pages: 15-21 DOI: 10.1093/bioinformatics/bts635 Published: JAN 2013

Times Cited in Web of Science Core Collection: 13135

Total Times Cited: 13201

Record 13 of 25

Title: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Author(s): Langmead, B (Langmead, Ben); Trapnell, C (Trapnell, Cole); Pop, M (Pop, Mihai); Salzberg, SL (Salzberg, Steven L.)

Source: GENOME BIOLOGY Volume: 10 Issue: 3 Article Number: R25 DOI: 10.1186/gb-2009-10-3-r25 Published: 2009

Times Cited in Web of Science Core Collection: 12990

Total Times Cited: 13201

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 14 of 25

Title: Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Author(s): Schloss, PD (Schloss, Patrick D.); Westcott, SL (Westcott, Sarah L.); Ryabin, T (Ryabin, Thomas); Hall, JR (Hall, Justine R.); Hartmann, M (Hartmann, Martin); Hollister, EB (Hollister, Emily B.); Lesniewski, RA (Lesniewski, Ryan A.); Oakley, BB (Oakley, Brian B.); Parks, DH (Parks, Donovan H.); Robinson, CJ (Robinson, Courtney J.); Sahl, JW (Sahl, Jason W.); Stres, B (Stres, Blaz); Thallinger, GG (Thallinger, Gerhard G.); Van Horn, DJ (Van Horn, David J.); Weber, CF (Weber, Carolyn F.)

Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY Volume: 75 Issue: 23 Pages: 7537-7541 DOI: 10.1128/AEM.01541-09 Published: DEC 1 2009

Times Cited in Web of Science Core Collection: 12366

Total Times Cited: 12782

Web of Science Categories: Biotechnology & Applied Microbiology; Microbiology

Record 15 of 25

Title: RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Author(s): Stamatakis, A (Stamatakis, Alexandros)

Source: BIOINFORMATICS Volume: 22 Issue: 21 Pages: 2688-2690 DOI: 10.1093/bioinformatics/btl446 Published: NOV 1 2006

Times Cited in Web of Science Core Collection: 12204

Total Times Cited: 12485

Record 16 of 25

Title: The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Author(s): McKenna, A (McKenna, Aaron); Hanna, M (Hanna, Matthew); Banks, E (Banks, Eric); Sivachenko, A (Sivachenko, Andrey); Cibulskis, K (Cibulskis, Kristian); Kernytsky, A (Kernytsky, Andrew); Garimella, K (Garimella, Kiran); Altshuler, D (Altshuler, David); Gabriel, S (Gabriel, Stacey); Daly, M (Daly, Mark); DePristo, MA (DePristo, Mark A.)

Source: GENOME RESEARCH Volume: 20 Issue: 9 Pages: 1297-1303 DOI: 10.1101/gr.107524.110 Published: SEP 2010

Times Cited in Web of Science Core Collection: 11913

Total Times Cited: 12106

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Genetics & Heredity

Record 17 of 25

Title: Search and clustering orders of magnitude faster than BLAST

Author(s): Edgar, RC (Edgar, Robert C.)

Source: BIOINFORMATICS Volume: 26 Issue: 19 Pages: 2460-2461 DOI: 10.1093/bioinformatics/btq461 Published: OCT 2010

Times Cited in Web of Science Core Collection: 11817

Total Times Cited: 12161

Record 18 of 25

Title: Haploview: analysis and visualization of LD and haplotype maps

Author(s): Barrett, JC (Barrett, JC); Fry, B (Fry, B); Maller, J (Maller, J); Daly, MJ (Daly, MJ)

Source: BIOINFORMATICS Volume: 21 Issue: 2 Pages: 263-265 DOI: 10.1093/bioinformatics/bth457 Published: JAN 15 2005

Times Cited in Web of Science Core Collection: 11383

Total Times Cited: 11587

Record 19 of 25

Title: Pseudo-second order model for sorption processes

Author(s): Ho, YS (Ho, YS); McKay, G (McKay, G)

Source: PROCESS BIOCHEMISTRY Volume: 34 Issue: 5 Pages: 451-465 DOI: 10.1016/S0032-9592(98)00112-5 Published: JUL 1999

Times Cited in Web of Science Core Collection: 11053

Total Times Cited: 11577

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Engineering, Chemical

Record 20 of 25

Title: DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

Author(s): Librado, P (Librado, P.); Rozas, J (Rozas, J.)

Source: BIOINFORMATICS Volume: 25 Issue: 11 Pages: 1451-1452 DOI: 10.1093/bioinformatics/btp187 Published: JUN 1 2009

Times Cited in Web of Science Core Collection: 11034

Total Times Cited: 11789

Record 21 of 25

Title: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Author(s): Wang, Q (Wang, Qiong); Garrity, GM (Garrity, George M.); Tiedje, JM (Tiedje, James M.); Cole, JR (Cole, James R.)

Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY Volume: 73 Issue: 16 Pages: 5261-5267 DOI: 10.1128/AEM.00062-07 Published: AUG 2007

Times Cited in Web of Science Core Collection: 10833

Total Times Cited: 11223

Web of Science Categories: Biotechnology & Applied Microbiology; Microbiology

Record 22 of 25

Title: Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Author(s): Kearse, M (Kearse, Matthew); Moir, R (Moir, Richard); Wilson, A (Wilson, Amy); Stones-Havas, S (Stones-Havas, Steven); Cheung, M (Cheung, Matthew); Sturrock, S (Sturrock, Shane); Buxton, S (Buxton, Simon); Cooper, A (Cooper, Alex); Markowitz, S (Markowitz, Sidney); Duran, C (Duran, Chris); Thierer, T (Thierer, Tobias); Ashton, B (Ashton, Bruce); Meintjes, P (Meintjes, Peter); Drummond, A (Drummond, Alexei)

Source: BIOINFORMATICS Volume: 28 Issue: 12 Pages: 1647-1649 DOI: 10.1093/bioinformatics/bts199 Published: JUN 15 2012

Times Cited in Web of Science Core Collection: 10485

Total Times Cited: 10698

Conference Title: 20th Annual International Conference on Intelligent Systems for Molecular Biology

Conference Date: JUL 15-17, 2012

Conference Location: Long Beach, CA

Record 23 of 25

Title: SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Author(s): Bankevich, A (Bankevich, Anton); Nurk, S (Nurk, Sergey); Antipov, D (Antipov, Dmitry); Gurevich, AA (Gurevich, Alexey A.); Dvorkin, M (Dvorkin, Mikhail); Kulikov, AS (Kulikov, Alexander S.); Lesin, VM (Lesin, Valery M.); Nikolenko, SI (Nikolenko, Sergey I.); Pham, S (Son Pham); Prjibelski, AD (Prjibelski, Andrey D.); Pyshkin, AV (Pyshkin, Alexey V.); Sirotkin, AV (Sirotkin, Alexander V.); Vyahhi, N (Vyahhi, Nikolay); Tesler, G (Tesler, Glenn); Alekseyev, MA (Alekseyev, Max A.); Pevzner, PA (Pevzner, Pavel A.)

Source: JOURNAL OF COMPUTATIONAL BIOLOGY Volume: 19 Issue: 5 Pages: 455-477 DOI: 10.1089/cmb.2012.0021 Published: MAY 2012

Times Cited in Web of Science Core Collection: 10318

Total Times Cited: 10441

Record 24 of 25

Title: Full-length transcriptome assembly from RNA-Seq data without a reference genome

Author(s): Grabherr, MG (Grabherr, Manfred G.); Haas, BJ (Haas, Brian J.); Yassour, M (Yassour, Moran); Levin, JZ (Levin, Joshua Z.); Thompson, DA (Thompson, Dawn A.); Amit, I (Amit, Ido); Adiconis, X (Adiconis, Xian); Fan, L (Fan, Lin); Raychowdhury, R (Raychowdhury, Raktima); Zeng, QD (Zeng, Qiandong); Chen, ZH (Chen, Zehua); Mauceli, E (Mauceli, Evan); Hacohen, N (Hacohen, Nir); Gnirke, A (Gnirke, Andreas); Rhind, N (Rhind, Nicholas); di Palma, F (di Palma, Federica); Birren, BW (Birren, Bruce W.); Nusbaum, C (Nusbaum, Chad); Lindblad-Toh, K (Lindblad-Toh, Kerstin); Friedman, N (Friedman, Nir); Regev, A (Regev, Aviv)

Source: NATURE BIOTECHNOLOGY Volume: 29 Issue: 7 Pages: 644-U130 DOI: 10.1038/nbt.1883 Published: JUL 2011

Times Cited in Web of Science Core Collection: 10240

Total Times Cited: 10661

Web of Science Categories: Biotechnology & Applied Microbiology

Record 25 of 25

Title: Minimal criteria for defining multipotent mesenchymal stromal cells. The International Society for Cellular Therapy position statement

Author(s): Dominici, M (Dominici, M.); Le Blanc, K (Le Blanc, K.); Mueller, I (Mueller, I.); Slaper-Cortenbach, I (Slaper-Cortenbach, I.); Marini, FC (Marini, F. C.); Krause, DS (Krause, D. S.); Deans, RJ (Deans, R. J.); Keating, A (Keating, A.); Prockop, DJ (Prockop, D. J.); Horwitz, EM (Horwitz, E. M.)

Source: CYTOTHERAPY Volume: 8 Issue: 4 Pages: 315-317 DOI: 10.1080/14653240600855905 Published: AUG 2006

Times Cited in Web of Science Core Collection: 10218

Total Times Cited: 10969

Web of Science Categories: Cell & Tissue Engineering; Biotechnology & Applied Microbiology; Cell Biology; Hematology; Medicine, Research & Experimental