cis_3

Trend Research Centre


5000 CLUB OF THE BIOTECHNOLOGY AND APPLIED MICROBIOLOGY

Science Citation Index-Expanded (SCI-EXPANDED) --1900-present

There were 55,131,643 publications which included 38,144,793 articles in the SCI-EXPANDED from 1900

There were 727,738 publications including 571,953 articles in Web of Science category of the biotechnology and applied microbiology

47 articles have been cited at least 5000 times from Web of Science Core Collection.

Data last updated 17 April 2020

Figure 1. 5000 club of the biotechnology and applied microbiology by year

 

Figure 2. 5000 club of the biotechnology and applied microbiology by total citations

 

Figure 3. 5000 club of the biotechnology and applied microbiology by citations per year

 

Figure 4. 5000 club of the biotechnology and applied microbiology by total citations in 2019

Record 1 of 47

Title: Fast and accurate short read alignment with Burrows-Wheeler transform

Author(s): Li, H (Li, Heng); Durbin, R (Durbin, Richard)

Source: BIOINFORMATICS  Volume: 25  Issue: 14  Pages: 1754-1760  DOI: 10.1093/bioinformatics/btp324  Published: JUL 15 2009 

Times Cited in Web of Science Core Collection: 23881

Total Times Cited: 24129

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 2 of 47

Title: MRBAYES: Bayesian inference of phylogenetic trees

Author(s): Huelsenbeck, JP (Huelsenbeck, JP); Ronquist, F (Ronquist, F)

Source: BIOINFORMATICS  Volume: 17  Issue: 8  Pages: 754-755  DOI: 10.1093/bioinformatics/17.8.754  Published: AUG 2001 

Times Cited in Web of Science Core Collection: 21580

Total Times Cited: 22372

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 3 of 47

Title: Clustal W and clustal X version 2.0

Author(s): Larkin, MA (Larkin, M. A.); Blackshields, G (Blackshields, G.); Brown, NP (Brown, N. P.); Chenna, R (Chenna, R.); McGettigan, PA (McGettigan, P. A.); McWilliam, H (McWilliam, H.); Valentin, F (Valentin, F.); Wallace, IM (Wallace, I. M.); Wilm, A (Wilm, A.); Lopez, R (Lopez, R.); Thompson, JD (Thompson, J. D.); Gibson, TJ (Gibson, T. J.); Higgins, DG (Higgins, D. G.)

Source: BIOINFORMATICS  Volume: 23  Issue: 21  Pages: 2947-2948  DOI: 10.1093/bioinformatics/btm404  Published: NOV 1 2007 

Times Cited in Web of Science Core Collection: 18067

Total Times Cited: 18745

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 4 of 47

Title: MODELTEST: testing the model of DNA substitution

Author(s): Posada, D (Posada, D); Crandall, KA (Crandall, KA)

Source: BIOINFORMATICS  Volume: 14  Issue: 9  Pages: 817-818  DOI: 10.1093/bioinformatics/14.9.817  Published: 1998 

Times Cited in Web of Science Core Collection: 17017

Total Times Cited: 17784

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 5 of 47

Title: MrBayes 3: Bayesian phylogenetic inference under mixed models

Author(s): Ronquist, F (Ronquist, F); Huelsenbeck, JP (Huelsenbeck, JP)

Source: BIOINFORMATICS  Volume: 19  Issue: 12  Pages: 1572-1574  DOI: 10.1093/bioinformatics/btg180  Published: AUG 12 2003 

Times Cited in Web of Science Core Collection: 14996

Total Times Cited: 15641

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 6 of 47

Title: Cytoscape: A software environment for integrated models of biomolecular interaction networks

Author(s): Shannon, P (Shannon, P); Markiel, A (Markiel, A); Ozier, O (Ozier, O); Baliga, NS (Baliga, NS); Wang, JT (Wang, JT); Ramage, D (Ramage, D); Amin, N (Amin, N); Schwikowski, B (Schwikowski, B); Ideker, T (Ideker, T)

Source: GENOME RESEARCH  Volume: 13  Issue: 11  Pages: 2498-2504  DOI: 10.1101/gr.1239303  Published: NOV 2003 

Times Cited in Web of Science Core Collection: 12153

Total Times Cited: 12446

Document Type: Article; Proceedings Paper

Conference Title: 3rd International Conference on Systems Biology 2002

Conference Date: DEC 13-15, 2002

Conference Location: KAROLINSKA INST, STOCKHOLM, SWEDEN

Conference Host: KAROLINSKA INST

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Genetics & Heredity

Record 7 of 47

Title: RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Author(s): Stamatakis, A (Stamatakis, Alexandros)

Source: BIOINFORMATICS  Volume: 22  Issue: 21  Pages: 2688-2690  DOI: 10.1093/bioinformatics/btl446  Published: NOV 1 2006 

Times Cited in Web of Science Core Collection: 10961

Total Times Cited: 11203

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 8 of 47

Title: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Author(s): Langmead, B (Langmead, Ben); Trapnell, C (Trapnell, Cole); Pop, M (Pop, Mihai); Salzberg, SL (Salzberg, Steven L.)

Source: GENOME BIOLOGY  Volume: 10  Issue: 3  Article Number: R25  DOI: 10.1186/gb-2009-10-3-r25  Published: 2009 

Times Cited in Web of Science Core Collection: 10901

Total Times Cited: 11065

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 9 of 47

Title: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Author(s): Vandesompele, J (Vandesompele, Jo); De Preter, K (De Preter, Katleen); Pattyn, F (Pattyn, Filip); Poppe, B (Poppe, Bruce); Van Roy, N (Van Roy, Nadine); De Paepe, A (De Paepe, Anne); Speleman, F (Speleman, Frank)

Source: GENOME BIOLOGY  Volume: 3  Issue: 7  Article Number: 0034.1  DOI: 10.1186/gb-2002-3-7-research0034  Published: 2002 

Times Cited in Web of Science Core Collection: 10664

Total Times Cited: 10891

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 10 of 47

Title: Haploview: analysis and visualization of LD and haplotype maps

Author(s): Barrett, JC (Barrett, JC); Fry, B (Fry, B); Maller, J (Maller, J); Daly, MJ (Daly, MJ)

Source: BIOINFORMATICS  Volume: 21  Issue: 2  Pages: 263-265  DOI: 10.1093/bioinformatics/bth457  Published: JAN 15 2005 

Times Cited in Web of Science Core Collection: 10622

Total Times Cited: 10804

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 11 of 47

Title: Trimmomatic: a flexible trimmer for Illumina sequence data

Author(s): Bolger, AM (Bolger, Anthony M.); Lohse, M (Lohse, Marc); Usadel, B (Usadel, Bjoern)

Source: BIOINFORMATICS  Volume: 30  Issue: 15  Pages: 2114-2120  DOI: 10.1093/bioinformatics/btu170  Published: AUG 1 2014 

Times Cited in Web of Science Core Collection: 10554

Total Times Cited: 10712

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 12 of 47

Title: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Author(s): Robinson, MD (Robinson, Mark D.); McCarthy, DJ (McCarthy, Davis J.); Smyth, GK (Smyth, Gordon K.)

Source: BIOINFORMATICS  Volume: 26  Issue: 1  Pages: 139-140  DOI: 10.1093/bioinformatics/btp616  Published: JAN 1 2010 

Times Cited in Web of Science Core Collection: 10169

Total Times Cited: 10271

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 13 of 47

Title: RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Author(s): Stamatakis, A (Stamatakis, Alexandros)

Source: BIOINFORMATICS  Volume: 30  Issue: 9  Pages: 1312-1313  DOI: 10.1093/bioinformatics/btu033  Published: MAY 1 2014 

Times Cited in Web of Science Core Collection: 9768

Total Times Cited: 9929

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 14 of 47

Title: Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Author(s): Schloss, PD (Schloss, Patrick D.); Westcott, SL (Westcott, Sarah L.); Ryabin, T (Ryabin, Thomas); Hall, JR (Hall, Justine R.); Hartmann, M (Hartmann, Martin); Hollister, EB (Hollister, Emily B.); Lesniewski, RA (Lesniewski, Ryan A.); Oakley, BB (Oakley, Brian B.); Parks, DH (Parks, Donovan H.); Robinson, CJ (Robinson, Courtney J.); Sahl, JW (Sahl, Jason W.); Stres, B (Stres, Blaz); Thallinger, GG (Thallinger, Gerhard G.); Van Horn, DJ (Van Horn, David J.); Weber, CF (Weber, Carolyn F.)

Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY  Volume: 75  Issue: 23  Pages: 7537-7541  DOI: 10.1128/AEM.01541-09  Published: DEC 1 2009 

Times Cited in Web of Science Core Collection: 9691

Total Times Cited: 10005

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Microbiology

Record 15 of 47

Title: DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

Author(s): Librado, P (Librado, P.); Rozas, J (Rozas, J.)

Source: BIOINFORMATICS  Volume: 25  Issue: 11  Pages: 1451-1452  DOI: 10.1093/bioinformatics/btp187  Published: JUN 1 2009 

Times Cited in Web of Science Core Collection: 9505

Total Times Cited: 10135

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 16 of 47

Title: Pseudo-second order model for sorption processes

Author(s): Ho, YS (Ho, YS); McKay, G (McKay, G)

Source: PROCESS BIOCHEMISTRY  Volume: 34  Issue: 5  Pages: 451-465  DOI: 10.1016/S0032-9592(98)00112-5  Published: JUL 1999 

Times Cited in Web of Science Core Collection: 9026

Total Times Cited: 9495

Document Type: Article

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Engineering, Chemical

Record 17 of 47

Title: Search and clustering orders of magnitude faster than BLAST

Author(s): Edgar, RC (Edgar, Robert C.)

Source: BIOINFORMATICS  Volume: 26  Issue: 19  Pages: 2460-2461  DOI: 10.1093/bioinformatics/btq461  Published: OCT 2010 

Times Cited in Web of Science Core Collection: 8677

Total Times Cited: 8903

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 18 of 47

Title: The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Author(s): McKenna, A (McKenna, Aaron); Hanna, M (Hanna, Matthew); Banks, E (Banks, Eric); Sivachenko, A (Sivachenko, Andrey); Cibulskis, K (Cibulskis, Kristian); Kernytsky, A (Kernytsky, Andrew); Garimella, K (Garimella, Kiran); Altshuler, D (Altshuler, David); Gabriel, S (Gabriel, Stacey); Daly, M (Daly, Mark); DePristo, MA (DePristo, Mark A.)

Source: GENOME RESEARCH  Volume: 20  Issue: 9  Pages: 1297-1303  DOI: 10.1101/gr.107524.110  Published: SEP 2010 

Times Cited in Web of Science Core Collection: 8589

Total Times Cited: 8711

Document Type: Article

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Genetics & Heredity

Record 19 of 47

Title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Author(s): Love, MI (Love, Michael I.); Huber, W (Huber, Wolfgang); Anders, S (Anders, Simon)

Source: GENOME BIOLOGY  Volume: 15  Issue: 12  Article Number: 550  DOI: 10.1186/s13059-014-0550-8  Published: 2014 

Times Cited in Web of Science Core Collection: 8478

Total Times Cited: 8512

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 20 of 47

Title: PROFILING OF COMPLEX MICROBIAL-POPULATIONS BY DENATURING GRADIENT GEL-ELECTROPHORESIS ANALYSIS OF POLYMERASE CHAIN REACTION-AMPLIFIED GENES-CODING FOR 16S RIBOSOMAL-RNA

Author(s): MUYZER, G (MUYZER, G); DEWAAL, EC (DEWAAL, EC); UITTERLINDEN, AG (UITTERLINDEN, AG)

Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY  Volume: 59  Issue: 3  Pages: 695-700  DOI: 10.1128/AEM.59.3.695-700.1993  Published: MAR 1993 

Times Cited in Web of Science Core Collection: 8282

Total Times Cited: 9418

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Microbiology

Record 21 of 47

Title: Minimal criteria for defining multipotent mesenchymal stromal cells. The International Society for Cellular Therapy position statement

Author(s): Dominici, M (Dominici, M.); Le Blanc, K (Le Blanc, K.); Mueller, I (Mueller, I.); Slaper-Cortenbach, I (Slaper-Cortenbach, I.); Marini, FC (Marini, F. C.); Krause, DS (Krause, D. S.); Deans, RJ (Deans, R. J.); Keating, A (Keating, A.); Prockop, DJ (Prockop, D. J.); Horwitz, EM (Horwitz, E. M.)

Source: CYTOTHERAPY  Volume: 8  Issue: 4  Pages: 315-317  DOI: 10.1080/14653240600855905  Published: AUG 2006 

Times Cited in Web of Science Core Collection: 8211

Total Times Cited: 8847

Document Type: Article

Web of Science Categories: Cell & Tissue Engineering; Biotechnology & Applied Microbiology; Cell Biology; Hematology; Medicine, Research & Experimental

Record 22 of 47

Title: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Author(s): Wang, Q (Wang, Qiong); Garrity, GM (Garrity, George M.); Tiedje, JM (Tiedje, James M.); Cole, JR (Cole, James R.)

Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY  Volume: 73  Issue: 16  Pages: 5261-5267  DOI: 10.1128/AEM.00062-07  Published: AUG 2007 

Times Cited in Web of Science Core Collection: 8206

Total Times Cited: 8480

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Microbiology

Record 23 of 47

Title: Bioconductor: open software development for computational biology and bioinformatics

Author(s): Gentleman, RC (Gentleman, RC); Carey, VJ (Carey, VJ); Bates, DM (Bates, DM); Bolstad, B (Bolstad, B); Dettling, M (Dettling, M); Dudoit, S (Dudoit, S); Ellis, B (Ellis, B); Gautier, L (Gautier, L); Ge, YC (Ge, YC); Gentry, J (Gentry, J); Hornik, K (Hornik, K); Hothorn, T (Hothorn, T); Huber, W (Huber, W); Iacus, S (Iacus, S); Irizarry, R (Irizarry, R); Leisch, F (Leisch, F); Li, C (Li, C); Maechler, M (Maechler, M); Rossini, AJ (Rossini, AJ); Sawitzki, G (Sawitzki, G); Smith, C (Smith, C); Smyth, G (Smyth, G); Tierney, L (Tierney, L); Yang, JYH (Yang, JYH); Zhang, JH (Zhang, JH)

Source: GENOME BIOLOGY  Volume: 5  Issue: 10  Article Number: R80  DOI: 10.1186/gb-2004-5-10-r80  Published: 2004 

Times Cited in Web of Science Core Collection: 8120

Total Times Cited: 8199

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 24 of 47

Title: Full-length transcriptome assembly from RNA-Seq data without a reference genome

Author(s): Grabherr, MG (Grabherr, Manfred G.); Haas, BJ (Haas, Brian J.); Yassour, M (Yassour, Moran); Levin, JZ (Levin, Joshua Z.); Thompson, DA (Thompson, Dawn A.); Amit, I (Amit, Ido); Adiconis, X (Adiconis, Xian); Fan, L (Fan, Lin); Raychowdhury, R (Raychowdhury, Raktima); Zeng, QD (Zeng, Qiandong); Chen, ZH (Chen, Zehua); Mauceli, E (Mauceli, Evan); Hacohen, N (Hacohen, Nir); Gnirke, A (Gnirke, Andreas); Rhind, N (Rhind, Nicholas); di Palma, F (di Palma, Federica); Birren, BW (Birren, Bruce W.); Nusbaum, C (Nusbaum, Chad); Lindblad-Toh, K (Lindblad-Toh, Kerstin); Friedman, N (Friedman, Nir); Regev, A (Regev, Aviv)

Source: NATURE BIOTECHNOLOGY  Volume: 29  Issue: 7  Pages: 644-U130  DOI: 10.1038/nbt.1883  Published: JUL 2011 

Times Cited in Web of Science Core Collection: 7604

Total Times Cited: 7914

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology

Record 25 of 47

Title: Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Author(s): Kearse, M (Kearse, Matthew); Moir, R (Moir, Richard); Wilson, A (Wilson, Amy); Stones-Havas, S (Stones-Havas, Steven); Cheung, M (Cheung, Matthew); Sturrock, S (Sturrock, Shane); Buxton, S (Buxton, Simon); Cooper, A (Cooper, Alex); Markowitz, S (Markowitz, Sidney); Duran, C (Duran, Chris); Thierer, T (Thierer, Tobias); Ashton, B (Ashton, Bruce); Meintjes, P (Meintjes, Peter); Drummond, A (Drummond, Alexei)

Source: BIOINFORMATICS  Volume: 28  Issue: 12  Pages: 1647-1649  DOI: 10.1093/bioinformatics/bts199  Published: JUN 15 2012 

Times Cited in Web of Science Core Collection: 7362

Total Times Cited: 7511

Document Type: Article; Proceedings Paper

Conference Title: 20th Annual International Conference on Intelligent Systems for Molecular Biology

Conference Date: JUL 15-17, 2012

Conference Location: Long Beach, CA

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 26 of 47

Title: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Author(s): Trapnell, C (Trapnell, Cole); Williams, BA (Williams, Brian A.); Pertea, G (Pertea, Geo); Mortazavi, A (Mortazavi, Ali); Kwan, G (Kwan, Gordon); van Baren, MJ (van Baren, Marijke J.); Salzberg, SL (Salzberg, Steven L.); Wold, BJ (Wold, Barbara J.); Pachter, L (Pachter, Lior)

Source: NATURE BIOTECHNOLOGY  Volume: 28  Issue: 5  Pages: 511-U174  DOI: 10.1038/nbt.1621  Published: MAY 2010 

Times Cited in Web of Science Core Collection: 7174

Total Times Cited: 7347

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology

Record 27 of 47

Title: TopHat: discovering splice junctions with RNA-Seq

Author(s): Trapnell, C (Trapnell, Cole); Pachter, L (Pachter, Lior); Salzberg, SL (Salzberg, Steven L.)

Source: BIOINFORMATICS  Volume: 25  Issue: 9  Pages: 1105-1111  DOI: 10.1093/bioinformatics/btp120  Published: MAY 1 2009 

Times Cited in Web of Science Core Collection: 6983

Total Times Cited: 7080

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 28 of 47

Title: STAR: ultrafast universal RNA-seq aligner

Author(s): Dobin, A (Dobin, Alexander); Davis, CA (Davis, Carrie A.); Schlesinger, F (Schlesinger, Felix); Drenkow, J (Drenkow, Jorg); Zaleski, C (Zaleski, Chris); Jha, S (Jha, Sonali); Batut, P (Batut, Philippe); Chaisson, M (Chaisson, Mark); Gingeras, TR (Gingeras, Thomas R.)

Source: BIOINFORMATICS  Volume: 29  Issue: 1  Pages: 15-21  DOI: 10.1093/bioinformatics/bts635  Published: JAN 2013 

Times Cited in Web of Science Core Collection: 6886

Total Times Cited: 6908

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 29 of 47

Title: Differential expression analysis for sequence count data

Author(s): Anders, S (Anders, Simon); Huber, W (Huber, Wolfgang)

Source: GENOME BIOLOGY  Volume: 11  Issue: 10  Article Number: R106  DOI: 10.1186/gb-2010-11-10-r106  Published: 2010 

Times Cited in Web of Science Core Collection: 6856

Total Times Cited: 6962

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 30 of 47

Title: Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Author(s): Conesa, A (Conesa, A); Gotz, S (Gotz, S); Garcia-Gomez, JM (Garcia-Gomez, JM); Terol, J (Terol, J); Talon, M (Talon, M); Robles, M (Robles, M)

Source: BIOINFORMATICS  Volume: 21  Issue: 18  Pages: 3674-3676  DOI: 10.1093/bioinformatics/bti610  Published: SEP 15 2005 

Times Cited in Web of Science Core Collection: 6450

Total Times Cited: 6637

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 31 of 47

Title: APE: Analyses of Phylogenetics and Evolution in R language

Author(s): Paradis, E (Paradis, E); Claude, J (Claude, J); Strimmer, K (Strimmer, K)

Source: BIOINFORMATICS  Volume: 20  Issue: 2  Pages: 289-290  DOI: 10.1093/bioinformatics/btg412  Published: JAN 22 2004 

Times Cited in Web of Science Core Collection: 6355

Total Times Cited: 6413

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 32 of 47

Title: UCHIME improves sensitivity and speed of chimera detection

Author(s): Edgar, RC (Edgar, Robert C.); Haas, BJ (Haas, Brian J.); Clemente, JC (Clemente, Jose C.); Quince, C (Quince, Christopher); Knight, R (Knight, Rob)

Source: BIOINFORMATICS  Volume: 27  Issue: 16  Pages: 2194-2200  DOI: 10.1093/bioinformatics/btr381  Published: AUG 15 2011 

Times Cited in Web of Science Core Collection: 6198

Total Times Cited: 6432

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 33 of 47

Title: SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Author(s): Bankevich, A (Bankevich, Anton); Nurk, S (Nurk, Sergey); Antipov, D (Antipov, Dmitry); Gurevich, AA (Gurevich, Alexey A.); Dvorkin, M (Dvorkin, Mikhail); Kulikov, AS (Kulikov, Alexander S.); Lesin, VM (Lesin, Valery M.); Nikolenko, SI (Nikolenko, Sergey I.); Pham, S (Son Pham); Prjibelski, AD (Prjibelski, Andrey D.); Pyshkin, AV (Pyshkin, Alexey V.); Sirotkin, AV (Sirotkin, Alexander V.); Vyahhi, N (Vyahhi, Nikolay); Tesler, G (Tesler, Glenn); Alekseyev, MA (Alekseyev, Max A.); Pevzner, PA (Pevzner, Pavel A.)

Source: JOURNAL OF COMPUTATIONAL BIOLOGY  Volume: 19  Issue: 5  Pages: 455-477  DOI: 10.1089/cmb.2012.0021  Published: MAY 2012 

Times Cited in Web of Science Core Collection: 6166

Total Times Cited: 6249

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 34 of 47

Title: BEDTools: a flexible suite of utilities for comparing genomic features

Author(s): Quinlan, AR (Quinlan, Aaron R.); Hall, IM (Hall, Ira M.)

Source: BIOINFORMATICS  Volume: 26  Issue: 6  Pages: 841-842  DOI: 10.1093/bioinformatics/btq033  Published: MAR 15 2010 

Times Cited in Web of Science Core Collection: 6166

Total Times Cited: 6182

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 35 of 47

Title: Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Author(s): Zerbino, DR (Zerbino, Daniel R.); Birney, E (Birney, Ewan)

Source: GENOME RESEARCH  Volume: 18  Issue: 5  Pages: 821-829  DOI: 10.1101/gr.074492.107  Published: MAY 2008 

Times Cited in Web of Science Core Collection: 6032

Total Times Cited: 6177

Document Type: Article

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Genetics & Heredity

Record 36 of 47

Title: WebLogo: A sequence logo generator

Author(s): Crooks, GE (Crooks, GE); Hon, G (Hon, G); Chandonia, JM (Chandonia, JM); Brenner, SE (Brenner, SE)

Source: GENOME RESEARCH  Volume: 14  Issue: 6  Pages: 1188-1190  DOI: 10.1101/gr.849004  Published: JUN 2004 

Times Cited in Web of Science Core Collection: 6010

Total Times Cited: 6136

Document Type: Article

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Genetics & Heredity

Record 37 of 47

Title: TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Author(s): Kim, D (Kim, Daehwan); Pertea, G (Pertea, Geo); Trapnell, C (Trapnell, Cole); Pimentel, H (Pimentel, Harold); Kelley, R (Kelley, Ryan); Salzberg, SL (Salzberg, Steven L.)

Source: GENOME BIOLOGY  Volume: 14  Issue: 4  Article Number: R36  DOI: 10.1186/gb-2013-14-4-r36  Published: 2013 

Times Cited in Web of Science Core Collection: 5851

Total Times Cited: 5941

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 38 of 47

Title: MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Author(s): Cox, J (Cox, Juergen); Mann, M (Mann, Matthias)

Source: NATURE BIOTECHNOLOGY  Volume: 26  Issue: 12  Pages: 1367-1372  DOI: 10.1038/nbt.1511  Published: DEC 2008 

Times Cited in Web of Science Core Collection: 5689

Total Times Cited: 5711

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology

Record 39 of 47

Title: A BROAD HOST RANGE MOBILIZATION SYSTEM FOR INVIVO GENETIC-ENGINEERING - TRANSPOSON MUTAGENESIS IN GRAM-NEGATIVE BACTERIA

Author(s): SIMON, R (SIMON, R); PRIEFER, U (PRIEFER, U); PUHLER, A (PUHLER, A)

Source: BIO-TECHNOLOGY  Volume: 1  Issue: 9  Pages: 784-791  DOI: 10.1038/nbt1183-784  Published: 1983 

Times Cited in Web of Science Core Collection: 5602

Total Times Cited: 5680

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology

Record 40 of 47

Title: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

Author(s): Bolstad, BM (Bolstad, BM); Irizarry, RA (Irizarry, RA); Astrand, M (Astrand, M); Speed, TP (Speed, TP)

Source: BIOINFORMATICS  Volume: 19  Issue: 2  Pages: 185-193  DOI: 10.1093/bioinformatics/19.2.185  Published: JAN 22 2003 

Times Cited in Web of Science Core Collection: 5551

Total Times Cited: 5638

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 41 of 47

Title: The RAST server: Rapid annotations using subsystems technology

Author(s): Aziz, RK (Aziz, Ramy K.); Bartels, D (Bartels, Daniela); Best, AA (Best, Aaron A.); DeJongh, M (DeJongh, Matthew); Disz, T (Disz, Terrence); Edwards, RA (Edwards, Robert A.); Formsma, K (Formsma, Kevin); Gerdes, S (Gerdes, Svetlana); Glass, EM (Glass, Elizabeth M.); Kubal, M (Kubal, Michael); Meyer, F (Meyer, Folker); Olsen, GJ (Olsen, Gary J.); Olson, R (Olson, Robert); Osterman, AL (Osterman, Andrei L.); Overbeek, RA (Overbeek, Ross A.); McNeil, LK (McNeil, Leslie K.); Paarmann, D (Paarmann, Daniel); Paczian, T (Paczian, Tobias); Parrello, B (Parrello, Bruce); Pusch, GD (Pusch, Gordon D.); Reich, C (Reich, Claudia); Stevens, R (Stevens, Rick); Vassieva, O (Vassieva, Olga); Vonstein, V (Vonstein, Veronika); Wilke, A (Wilke, Andreas); Zagnitko, O (Zagnitko, Olga)

Source: BMC GENOMICS  Volume: 9  Article Number: 75  DOI: 10.1186/1471-2164-9-75  Published: FEB 8 2008 

Times Cited in Web of Science Core Collection: 5549

Total Times Cited: 5617

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 42 of 47

Title: STUDIES OF MARINE PLANKTONIC DIATOMS .1. CYCLOTELLA NANA HUSTEDT, AND DETONULA CONFERVACEA (CLEVE) GRAN

Author(s): GUILLARD, RR (GUILLARD, RR); RYTHER, JH (RYTHER, JH)

Source: CANADIAN JOURNAL OF MICROBIOLOGY  Volume: 8  Issue: 2  Pages: 229-&  DOI: 10.1139/m62-029  Published: 1962 

Times Cited in Web of Science Core Collection: 5466

Total Times Cited: 5733

Document Type: Article

Web of Science Categories: Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Immunology; Microbiology

Record 43 of 47

Title: HTSeq-a Python framework to work with high-throughput sequencing data

Author(s): Anders, S (Anders, Simon); Pyl, PT (Pyl, Paul Theodor); Huber, W (Huber, Wolfgang)

Source: BIOINFORMATICS  Volume: 31  Issue: 2  Pages: 166-169  DOI: 10.1093/bioinformatics/btu638  Published: JAN 15 2015 

Times Cited in Web of Science Core Collection: 5383

Total Times Cited: 5421

Document Type: Article; Proceedings Paper

Conference Title: 14th Annual Bioinformatics Open Source Conference (BOSC)

Conference Date: JUL 19-20, 2013

Conference Location: Special Interest Grp, Berlin, GERMANY

Conference Host: Special Interest Grp

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 44 of 47

Title: Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

Author(s): DeSantis, TZ (DeSantis, T. Z.); Hugenholtz, P (Hugenholtz, P.); Larsen, N (Larsen, N.); Rojas, M (Rojas, M.); Brodie, EL (Brodie, E. L.); Keller, K (Keller, K.); Huber, T (Huber, T.); Dalevi, D (Dalevi, D.); Hu, P (Hu, P.); Andersen, GL (Andersen, G. L.)

Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY  Volume: 72  Issue: 7  Pages: 5069-5072  DOI: 10.1128/AEM.03006-05  Published: JUL 2006 

Times Cited in Web of Science Core Collection: 5308

Total Times Cited: 5445

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Microbiology

Record 45 of 47

Title: The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

Author(s): Arnold, K (Arnold, K); Bordoli, L (Bordoli, L); Kopp, J (Kopp, J); Schwede, T (Schwede, T)

Source: BIOINFORMATICS  Volume: 22  Issue: 2  Pages: 195-201  DOI: 10.1093/bioinformatics/bti770  Published: JAN 15 2006 

Times Cited in Web of Science Core Collection: 5181

Total Times Cited: 5601

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Computer Science, Interdisciplinary Applications; Mathematical & Computational Biology; Statistics & Probability

Record 46 of 47

Title: DAVID: Database for annotation, visualization, and integrated discovery

Author(s): Dennis, G (Dennis, G); Sherman, BT (Sherman, BT); Hosack, DA (Hosack, DA); Yang, J (Yang, J); Gao, W (Gao, W); Lane, HC (Lane, HC); Lempicki, RA (Lempicki, RA)

Source: GENOME BIOLOGY  Volume: 4  Issue: 9  Article Number: R60  DOI: 10.1186/gb-2003-4-9-r60  Published: 2003 

Times Cited in Web of Science Core Collection: 5180

Total Times Cited: 5259

Document Type: Article

Web of Science Categories: Biotechnology & Applied Microbiology; Genetics & Heredity

Record 47 of 47

Title: RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Author(s): Li, B (Li, Bo); Dewey, CN (Dewey, Colin N.)

Source: BMC BIOINFORMATICS  Volume: 12  Article Number: 323  DOI: 10.1186/1471-2105-12-323  Published: AUG 4 2011 

Times Cited in Web of Science Core Collection: 5103

Total Times Cited: 5214

Document Type: Article

Web of Science Categories: Biochemical Research Methods; Biotechnology & Applied Microbiology; Mathematical & Computational Biology